ScanproResults class

A class containing the results of a scanpro analysis

class ScanproResult

Bases: object

plot(kind='stripplot', clusters=None, n_columns=3, figsize=None, show=True, verbosity=1, save=False)

Plot proportions pro condition for all comparisons

Parameters:

• kind (str) – Kind of plot (stripplot, barplot and boxplot), defaults to ‘stripplot’

• clusters (list or str) – Specify clusters to plot, if None, all clusters will be plotted, defaults to None

• n_columns (int) – Number of columns in the figure, defaults to 3

• figsize (tuple) – Figure size, defaults to None (size is automatic)

• show (bool) – If True, the plot is shown, defaults to True

• save (str) – Path to save plot, add extension at the end e.g. ‘path/to/file.png’, defaults to False

• verbosity (int) – Verbosity level, defaults to 1

Return list:

List of axes if show is False

plot_samples(stacked=True, x='samples', save=False)

Plot proportions of clusters pro sample

Parameters:

• stacked (bool) – If True, a stacked bar plot is plotted, defaults to True

• x (str) – Specifies if clusters or samples are plotted as x axis, defaults to ‘samples’

• save (str) – Path to save plot, add extension at the end e.g. ‘path/to/file.png’, defaults to False