Scanpro quickstart

To use Scanpro, import the module and run the scanpro function.

from scanpro.scanpro import scanpro

out = scanpro(adata, samples_col='sample', clusters_col='cluster', conds_col='conds')

out.results

To plot results, run

out.plot()

# For boxplots, use the parameter <kind>

out.plot(kinde='boxplot')